PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15430.1
Common NameLR48_Vigan09g042800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 337aa    MW: 37684.7 Da    PI: 6.4143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14178223454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vang03g15430.1 178 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 223
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-285146IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.54E-14172224No hitNo description
PROSITE profilePS5088817.358174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-18176245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
LQNRHERWVY AIFWQATKDS DSRLTLEYGD GLFMGGKGRE GTEVRMSEEQ TRNNVNDIEW  60
FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS GVKQFEVNEC DERVGEARRH GIQTLVCVSV  120
ARGILELGSD EVLKLDYGVL QMVKSVLEER ESGSENPVSK QWVVGRRAGR VREALPVNHV  180
EAERQRREKL NQRFYALRSA VPNVSKMDKA SLLSDAVDYI NELKVKIGSL QAAFQAKQEA  240
PAEQVQPQSI PAPPSATTDM RVEVQILGSE AMIRVQSLNV NHPSARLMDA LRDVNLQVLH  300
ATISNIKEMM LQDVVVRVPH DLTTQEALQT AIMHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-18114717192Transcription factor MYC3
4rs9_A3e-18114717192Transcription factor MYC3
4rqw_B3e-18114717192Transcription factor MYC3
4rqw_A3e-18114717192Transcription factor MYC3
4ywc_B9e-18113456218Transcription factor MYC3
4ywc_A9e-18113456218Transcription factor MYC3
4rru_A9e-18113456218Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517245.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0L9VAT30.0A0A0L9VAT3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7S30.0A0A0S3S7S3_PHAAN; Uncharacterized protein
STRINGGLYMA02G09670.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-52bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]